Index _ | A | B | C | D | E | F | G | I | L | M | N | P | Q | R | S | T | U | V | W | X | Z _ __init__() (physioex.data.BandpassFilter method) (physioex.data.BasePhysioDataset method) (physioex.data.ChannelCache method) (physioex.data.CompiledPipeline method) (physioex.data.CompiledStep method) (physioex.data.EDFHeader method) (physioex.data.Identity method) (physioex.data.MultiDataset method) (physioex.data.NotchFilter method) (physioex.data.PreprocessingPipeline method) (physioex.data.PreprocessingStep method) (physioex.data.Resample method) (physioex.data.ResolvedChannel method) (physioex.data.SleepEvent method) (physioex.data.SubjectSpec method) (physioex.data.XSleepNetSpectrogram method) (physioex.data.ZScoreNormalize method) (physioex.models.BENDREncoder method) (physioex.models.BIOTEncoder method) (physioex.models.CBraModEncoder method) (physioex.models.chambon2018.Chambon2018Net method) (physioex.models.FoundationEncoder method) (physioex.models.LaBraMEncoder method) (physioex.models.NeuroLMEncoder method) (physioex.models.REVEEncoder method) (physioex.models.seqsleepnet.SeqSleepNet method) (physioex.models.SJEEncoder method) (physioex.models.SleepFMEncoder method) (physioex.models.sleeptransformer.SleepTransformer method) (physioex.models.TFCEncoder method) (physioex.models.tinysleepnet.TinySleepNet method) (physioex.train.logger.Logger method) (physioex.train.logger.NoOpLogger method) (physioex.train.multidevicetrainer.Trainer method) (physioex.train.trainer.Trainer method) A accuracy_score() (in module physioex.train.metrics) aggregate() (in module physioex.train.stats) aggregated_scalars() (in module physioex.train.stats) apply (physioex.data.CompiledStep attribute) atomic_save_array() (physioex.data.ChannelCache method) available_channels() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) available_datasets() (in module physioex.data.datasets) available_presets() (in module physioex.data) B BandpassFilter (class in physioex.data) BasePhysioDataset (class in physioex.data) BENDREncoder (class in physioex.models) BIOTEncoder (class in physioex.models) build_logger() (in module physioex.train.logger) C CBraModEncoder (class in physioex.models) Chambon2018Net (class in physioex.models.chambon2018) ChannelCache (class in physioex.data) clear() (physioex.data.ChannelCache method) close() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) (physioex.train.logger.Logger method) CohenDSpecificity (class in physioex.explain.foundational) compile() (physioex.data.BandpassFilter method) (physioex.data.Identity method) (physioex.data.NotchFilter method) (physioex.data.PreprocessingStep method) (physioex.data.Resample method) (physioex.data.XSleepNetSpectrogram method) (physioex.data.ZScoreNormalize method) CompiledPipeline (class in physioex.data) CompiledStep (class in physioex.data) compute_mask() (physioex.explain.foundational.CohenDSpecificity method) (physioex.explain.foundational.MarginSpecificity method) (physioex.explain.foundational.NoFilter method) (physioex.explain.foundational.SoftmaxSpecificity method) (physioex.explain.foundational.SpecificityStrategy method) (physioex.explain.foundational.TopKSpecificity method) ConceptualSpectralDecomposition (class in physioex.explain.foundational) confusion_matrix_figure() (in module physioex.train.stats) CSDResult (class in physioex.explain.foundational) D datasets (physioex.data.MultiDataset property) dict_collate_fn() (in module physioex.data) dicts_to_events() (in module physioex.data) discover_prototypes_nmf() (in module physioex.explain.prototypes.posthoc) E EDFHeader (class in physioex.data) encode() (physioex.models.chambon2018.Chambon2018Net method) (physioex.models.FoundationEncoder method) (physioex.models.seqsleepnet.SeqSleepNet method) (physioex.models.sleeptransformer.SleepTransformer method) (physioex.models.tinysleepnet.TinySleepNet method) evaluate_metrics() (in module physioex.explain.prototypes.posthoc) events_to_dicts() (in module physioex.data) explain() (physioex.explain.foundational.ConceptualSpectralDecomposition method) extract_embeddings() (in module physioex.models) F f1_score() (in module physioex.train.metrics) figure_from_cm() (in module physioex.train.stats) forward() (physioex.explain.prototypes.posthoc.VQBottleneck method) (physioex.models.chambon2018.Chambon2018Net method) (physioex.models.FoundationEncoder method) (physioex.models.seqsleepnet.SeqSleepNet method) (physioex.models.sleeptransformer.SleepTransformer method) (physioex.models.tinysleepnet.TinySleepNet method) FoundationEncoder (class in physioex.models) fs_out (physioex.data.CompiledStep attribute) G get_all_subject_metadata() (physioex.data.BasePhysioDataset method) get_dataset() (in module physioex.data.datasets) (physioex.models.FoundationEncoder class method) get_n_subjects() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) get_pipeline() (physioex.models.FoundationEncoder class method) get_preset() (in module physioex.data) get_splits() (physioex.data.BasePhysioDataset method) get_subject_events() (physioex.data.BasePhysioDataset method) get_subject_metadata() (physioex.data.BasePhysioDataset method) get_subjects() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) get_subjects_with_dataset_idx() (physioex.data.MultiDataset method) I Identity (class in physioex.data) is_dict_batch() (in module physioex.data) L LaBraMEncoder (class in physioex.models) learn_codebook_kmeans() (in module physioex.explain.prototypes.posthoc) linear_probe() (in module physioex.models) load_embeddings() (in module physioex.models) load_epoch_embeddings() (in module physioex.explain.prototypes.posthoc) load_epoch_embeddings_per_subject() (in module physioex.explain.prototypes.posthoc) load_from_pretrained() (in module physioex.models) load_memmap() (physioex.data.ChannelCache method) load_model() (in module physioex.train.models.load) log() (physioex.train.logger.Logger method) (physioex.train.logger.NoOpLogger method) log_figure() (physioex.train.logger.Logger method) log_graph() (physioex.train.logger.Logger method) log_histogram() (physioex.train.logger.Logger method) log_hparams() (physioex.train.logger.Logger method) log_learning_rate() (physioex.train.logger.Logger method) log_scalars() (physioex.train.logger.Logger method) log_update_norm() (physioex.train.logger.Logger method) Logger (class in physioex.train.logger) M mae_score() (in module physioex.train.metrics) map_events_to_epochs() (in module physioex.data) MarginSpecificity (class in physioex.explain.foundational) memmap_cache_stats() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) module physioex.explain.foundational physioex.explain.prototypes.posthoc physioex.train.metrics physioex.train.progress physioex.train.stats mse_score() (in module physioex.train.metrics) MultiDataset (class in physioex.data) N nearest_prototype_classify() (in module physioex.explain.prototypes.posthoc) NeuroLMEncoder (class in physioex.models) NoFilter (class in physioex.explain.foundational) NoOpLogger (class in physioex.train.logger) NotchFilter (class in physioex.data) P per_subject_metrics() (in module physioex.train.stats) physioex.explain.foundational module physioex.explain.prototypes.posthoc module physioex.train.metrics module physioex.train.progress module physioex.train.stats module precision_score() (in module physioex.train.metrics) PreprocessingPipeline (class in physioex.data) PreprocessingStep (class in physioex.data) probe() (physioex.data.BasePhysioDataset method) probe_edf_header() (in module physioex.data) Q quantize_embeddings() (in module physioex.explain.prototypes.posthoc) R r2_score() (in module physioex.train.metrics) recall_score() (in module physioex.train.metrics) Resample (class in physioex.data) resolve_channels() (in module physioex.data) ResolvedChannel (class in physioex.data) REVEEncoder (class in physioex.models) S save_json() (physioex.data.ChannelCache method) seed_everything() (in module physioex.train.trainer) SeqSleepNet (class in physioex.models.seqsleepnet) SJEEncoder (class in physioex.models) SleepEvent (class in physioex.data) SleepFMEncoder (class in physioex.models) SleepTransformer (class in physioex.models.sleeptransformer) SoftmaxSpecificity (class in physioex.explain.foundational) spec() (physioex.data.BandpassFilter method) (physioex.data.Identity method) (physioex.data.NotchFilter method) (physioex.data.PreprocessingStep method) (physioex.data.Resample method) (physioex.data.XSleepNetSpectrogram method) (physioex.data.ZScoreNormalize method) SpecificityStrategy (class in physioex.explain.foundational) split() (physioex.data.BasePhysioDataset method) (physioex.data.MultiDataset method) stack_channels() (in module physioex.data) SubjectSpec (class in physioex.data) T TFCEncoder (class in physioex.models) TinySleepNet (class in physioex.models.tinysleepnet) top_band_hz() (physioex.explain.foundational.CSDResult method) TopKSpecificity (class in physioex.explain.foundational) train_codebook() (in module physioex.explain.prototypes.posthoc) Trainer (class in physioex.train.multidevicetrainer) (class in physioex.train.trainer) U update() (physioex.train.logger.Logger method) V voting_evaluate() (physioex.train.trainer.Trainer class method) VQBottleneck (class in physioex.explain.prototypes.posthoc) W watch_model() (physioex.train.logger.Logger method) X XSleepNetSpectrogram (class in physioex.data) Z ZScoreNormalize (class in physioex.data)
